|
| microRNA-seq analysis package |
Arraystar |
Other Providers |
|
| • miRNA alignment and length distribution of adaptor-trimmed reads |
√ |
√ |
| • Novel miRNA prediction and predicted secondary structure |
√ |
√ |
| • microRNA expression analysis |
√ |
Option |
| • Differentially expressed miRNAs |
√ |
Option |
| • Genomic distribution of differentially expressed miRNAs along chromosomes |
√ |
no |
| • Hierarchical clustering heat maps |
√ |
no |
| • Statistics (t-test, DEGseq, volcano plot) to aid further experiments |
√ |
no |
| • miRNA target prediction and target gene network (not included if the database is not available) |
√ |
no |
| • GO/Pathway Analysis of miRNA Target Genes (not included if the database is not available) |
√ |
no |
* Available for human, mouse, rat, or species in miRBase.
