Specialized Data Analysis Services

  • Description
  • Data Submission
  • ChIP-seq

Arraystar bioinformatics team has been providing top-tier bioinformatic analyses as part of our comprehensive Services for over a decade. Now, we are expanding our expertise to offer specialized analysis services for customers who need data analysis only. If you're unsure how to process your raw sequencing data or lack the necessary setup/resources, we're here to help. Let us handle the complexities of bioinformatic analysis and unlock the full potential of your data, so you can focus on your lab research.

Our analysis services cover the sequencing types below:

Analysis Service

Raw Data Source

Price
 Ribosome Profiling Data  Analysis  Ribo Sequencing (CHX Treatment Only) (Illumina Single-read)
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 Integrative Analysis of Ribo-Seq  and RNA-Seq  Ribo Sequencing (CHX Treatment Only) (Illumina Single-read) and RNA Sequencing  (Illumina Paired-end)
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 Cut & Tag Data Analysis  CUT&Tag Sequencing (Illumina Paired-end)
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 ATAC-Seq Data Analysis  Assay for Transposase-Accessible Chromatin using  equencing (Illumina Paired-end)
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 ChIP-Seq Data Analysis  Chromatin Immunoprecipitation Followed by Sequencing  (Illumina Paired-end)
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After you request a quote online and sign up with us, please follow the instructions below to submit your raw data. We'll do all the analyses for you.

  1. Trimmed data files in FastQ format generated by Illumina sequencing platforms. Untrimmed raw FastQ data files must be provided with the 5' and 3' adapter sequencing information.
  2. It’s highly recommended to gzip-compress the FastQ files (e.g. using 7-zip for Windows or gzip for Linux) to reduce upload time, save storage space, and ensure data integrity.
  3. Use concise sample names to construct the file names, e.g. "treated_1.fastq.gz" for "treated" sample #1 fastq data compressed in gz format. For paired-end sequencing, each sample has two files R1 and R2, e.g. "treated_1. R1.fastq.gz" and "treated_1.R2.fastq.gz".
  4. Complete the Project form.
  5. Upload the all the data and project form into the server link we will provide you.

Chromatin Immunoprecipitation sequencing (ChIP-sequencing) directly profiles DNA-protein interactions, such as transcription factors or histones, which are essential for understanding epigenetic mechanisms. Our ChIP-sequencing bioinformatics service provides rich annotations, comprehensive data analyses, and publication-ready graphics.

ChIP Peak Distribution

Peak_distribution-1Peak_distribution-2

Fig 1. ChIP-peak distribution: Upper: ChIP-peak distribution across five different genomic regions. Lower: Shows the distribution of TF binding profiles within -10kb to 10 kb from the TSS

 

Motif Analysis

Motif

Fig 2. The TFBS (transcription factor binding site) motif logo plot

 

Data Visualization

Visualization

Fig 3. ChIP-Seq signals of IP and input are visualized together in the IGV software.